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Surveying the scope of aromatic decarboxylations catalyzed by prenylated-flavin dependent enzymes
Anushree Mondal ; Pronay Roy ; Jaclyn Carrannatto , et al. Faraday Discuss.,2024,252,208-222. DOI: 10.1039/D4FD00006D PubMed ID: 38837123
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Abstract: The prenylated-flavin mononucleotide-dependent decarboxylases (also known as UbiD-like enzymes) are the most recently discovered family of decarboxylases. The modified flavin facilitates the decarboxylation of unsaturated carboxylic acids through a novel mechanism involving 1,3-dipolar cyclo-addition chemistry. UbiD-like enzymes have attracted considerable interest for biocatalysis applications due to their ability to catalyse (de)carboxylation reactions on a broad range of aromatic substrates at otherwise unreactive carbon centres. There are now ~35[thin space (1/6-em)]000 protein sequences annotated as hypothetical UbiD-like enzymes. Sequence similarity network analyses of the UbiD protein family suggests that there are likely dozens of distinct decarboxylase enzymes represented within this family. Furthermore, many of the enzymes so far characterized can decarboxylate a broad range of substrates. Here we describe a strategy to identify potential substrates of UbiD-like enzymes based on detecting enzyme-catalysed solvent deuterium exchange into potential substrates. Using ferulic acid decarboxylase (FDC) as a model system, we tested a diverse range of aromatic and heterocyclic molecules for their ability to undergo enzyme-catalysed H/D exchange in deuterated buffer. We found that FDC catalyses H/D exchange, albeit at generally very low levels, into a wide range of small, aromatic molecules that have little resemblance to its physiological substrate. In contrast, the sub-set of aromatic carboxylic acids that are substrates for FDC-catalysed decarboxylation is much smaller. We discuss the implications of these findings for screening uncharacterized UbiD-like enzymes for novel (de)carboxylase activity.
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CAS No. : | 103-25-3 | MDL No. : | MFCD00017209 |
Formula : | C10H12O2 | Boiling Point : | No data available |
Linear Structure Formula : | CO2CH3C6H5C2H4 | InChI Key : | RPUSRLKKXPQSGP-UHFFFAOYSA-N |
M.W : | 164.20 | Pubchem ID : | 7643 |
Synonyms : |
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Chemical Name : | Methyl 3-phenylpropionate |
Signal Word: | Warning | Class: | |
Precautionary Statements: | P261-P305+P351+P338 | UN#: | |
Hazard Statements: | H315-H319-H335 | Packing Group: | |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
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With toluene-4-sulfonic acid; lithium chloride;[((S)-(+)-4,12-bis[di(3,5-xylyl)phosphino]-[2.2]-paracyclophane)dipalladium] tetrachloride; In water; butanone; at 25℃; under 22502.3 Torr;Inert atmosphere; | Lithium chloride (8.4 mg, 0.20 mmol), para-toluenesulfonic acid (34.4 mg, 0.20 mmol) and [(Xyl-(S)-Phanephos)Pd2Cl4] (0.01 mmol) were weighed into a 5 ml microwave vial. A stirring bar was added and the vial was sealed with a crimp cap and put under inert atmosphere. Styrene (1 mmol), dry and degassed methanol (1.5 ml) and an internal standard (approximately 10 mul of either tetraethylsilane and 1-methylnaphtalene) were added using a syringe. The solution was mixed before 20 mul of the solution was diluted in CDCl3 and analysed using NMR (to give a t0 spectra that calibrates the internal standard against starting material). The caps were pierced with two needles and quickly placed in an autoclave that had previously been placed under an argon atmosphere before being opened under a flow of argon. The autoclave was sealed, purged three times with CO and then pressurised to 30 bar and heated in a preheated oil bath at 25 C. with constant magnetic stirring. After the desired time, the autoclave was cooled to room temperature and the pressure released slowly. The mixture was then analysed by taking a sample, diluting with CDCl3 and obtaining a 1H NMR spectrum. The solvent was carefully removed from the reaction mixture and the crude product was filtered through a small column packed with Si02 eluting with hexane: ethylacetate 8:1. The solvent was removed to give carboxylic acid ester product as a 47:53 mixture of branched and linear isomers (71% conversion to ester, 62% isolated yield). The ratio of optical isomers was 94.5:5.5.The enantiomeric excess was determined by HPLC, using a Chirapak AD-H, 250×4.6 mm, 5 mum with guard cartridge, n-hexane 100%, 0.5 mL min-1, 210 nm, tR[(+)-S]=17.9 min, tR[(-)-R]=20.0 min, tR[linear]=25.1 min. GCMS shows the expected linear and branched esters. EIMS 164 (M+).NMR data for catalysis products: Methyl-2-phenylpropanoate:1H NMR (300 MHz, CDCl3) delta 1.42 (d, J=9, CH3, 3H), 3.57 (s, CH3, 3H), 3.65 (q, J=9 Hz, CH, 1H), 7.07-7.28 (m, ArH, 5H). 13C NMR (75 MHz, CDCl3) delta 18.6, 45.5, 52.1, 127.2, 127.5, 128.7, 140.5, 175.1.Methyl-3-phenylpropanoate:1H NMR (300 MHz, CDCl3) delta 2.55 (t, J=7.5, CH2, 2H), 2.87 (t, J=7.5, CH2, 2H), 3.58 (s, OCH3, 3H), 7.07-7.28 (m, ArH, 5H). 13C NMR (75 MHz, CDCl3) delta 31.0, 35.7, 51.7, 126.3, 128.3, 128.5, 173.4. |
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